Top 8 Payroll Software in the Philippines 2026

Choosing a payroll software in the Philippines is not as simple as it seems. The capability to streamline payroll processing is the very bare minimum a system must have, as there is something much more important – local labor regulations compliance.

It must be capable of integrating Social Security System (SSS), Pag-IBIG and PhilHealth mandated by the government as well. So, it is essential to be sure about computation for each worker and ensure 100% compliance.

It’s critical to automate these compliance obligations for all business locations. To help you decide which payroll software is best for your company, team size, and budget, we’ve prepared a list of 8 of the top payroll software for the Philippines.

What is Payroll Software?

Payroll Software is a computerized system that automates payroll, deductions, overtime, bonuses and net pay. Modern platforms also provide a one-stop solution for creating payslips and maintaining accurate records, in addition to salary processing and reporting.

Today, payroll systems go far beyond tedious spreadsheets. They can connect to HR and accounting software to eliminate duplicate data entry, streamline reporting and add employee documents to a single process.

A study in GPH-IJBM found the payroll system of the City Government of Naga highly effective in accuracy, timeliness, and reporting (overall mean 3.36 out of 4.00). It also identified linking payroll software with attendance systems as one of the highly challenging implementation issues.

The primary advantage for businesses in the Philippines is to make the payroll week an organized working flow. HR and finance teams don’t have to manage multiple files for SSS, PhilHealth, and Pag-IBIG, they can have centralized data.

Benefits of Payroll Software

By implementing payroll software in the Philippines, businesses can streamline their salary processing, ensure accuracy in employee records, and handle regular payroll. Some of the advantages to making use of payroll software are listed below:

• Minimizes Manual Errors: Automates salary calculations, deductions, overtime and allowances etc., minimizing manual coding and spreadsheet formula errors.
• Saves Time on Payroll Processing: Reduces repetitive tasks, enabling HR teams to focus on employee support, workforce planning, and other tasks.
• Supports Philippine Payroll Compliance: Determines applicable withholding tax, Pag-IBIG, PhilHealth deductions based on the rules set and the current requirements.
• Improves Payroll Transparency: Creates transparent pay slip and payroll reports that enable employees to see their pay, deductions, and net pay.
• Improves Data Security: Centralizes and controls access to sensitive payroll data, ensuring secure payroll records for employees.
• Connects HR and Accounting: Seamlessly integrates HR information with payroll, attendance, leave management and financial records, reducing duplication and simplifying payroll reconciliation.

Before Choosing One – Local Compliance is Non-negotiable

In the Philippine business environment, a general payroll software can help you with general payroll processing, from automatic calculations to leave and overtime tracking. But it does not necessarily mean they have been designed around local regulations such as SSS and PhilHealth – compliance risks.

When you are comparing tools such as ScaleOcean Atlas, Sprout, PayrollHero, or JeonSoft, here are the compliance in the Philippines that you cannot overlook:

• Social Security System (SSS) Brackets: Make sure that contributions are automatically calculated if contribution schedules or Monthly Salary Credit (MSC) tables change, or you may end up under-remitting.
• PhilHealth & Pag-IBIG Rates: Find a site that updates premium rates dynamically and not require your team to manually patch premium rates every time a new government circular comes out.
• BIR Withholding Tax & CAS Registration: The software should be consistent with BIR withholding tax tables and the guidance from the TRAIN Law.
• Pro-tip: If you are using a Computerized Accounting System (CAS) (like QuickBooks), you still need to register it with BIR for legality.
• Audit-Ready Payroll Logs & Payslips: Ensure the software can generate and maintain accurate logs of earnings, deductions, employer contributions, and net pay, which can facilitate internal audits and compliance with regulatory requirements.

Keep in mind that software automates the math, but the legal liability still rests on you. Be sure to find out how quickly your software company releases regulatory changes and never hesitate to ask a local tax or payroll expert.

The 8 Best Payroll Software in the Philippines 2026

The best payroll software depends on the number of employees, the current tech infrastructure and budget. In order to narrow down the choices, we have gathered a list of the 8 best options available, from local cloud-based platforms to multi-country platforms.

1. ScaleOcean Atlas HRIS & Payroll Module

ScaleOcean Atlas HRIS & Payroll Module is one of the best payroll software in Philippines that offers a full-scale solution engineered for organizations seeking to connect workforce management with their business workflows.

For expanding businesses in the Philippines, managing multi-branch operations or growing teams through disconnected spreadsheets creates administrative friction. It solves this by consolidating payroll records and attendance within one system.

A key differentiator is ScaleMind AI, which transforms routine HR and payroll data into strategic workforce insights. You can discuss your business needs by scheduling a consultation with our experts, and below here are the key features:

• Centralized Employee Management: Integrate your employee information into a single system for maintaining data consistency across HR, finance and operations.
• Automated Payroll & Reporting: Eliminate a lot of time that is spent on month-end payroll review cycles and create detailed breakdown reports.
• Seamless HR & Accounting Integration: Connect payroll costs directly to accounting modules and avoid double data entry for precise labor cost tracking.
• ScaleMind AI Analytics: Use predictive insights to gain a better understanding of workforce costs, optimize schedules, and drive data-informed decision-making.
• Flexible Modular Architecture: Choose from features that correspond with your current business size and scale and can be expanded as your team expands.
• Cross-Departmental Synergy: Facilitate seamless cooperation between HR and finance departments with integrated reporting and workflows.
• Customizable Workflows: Adapt approvals, pay structures, and reporting parameters to match your company’s existing SOPs.

Pros	Cons
Embeds HR seamlessly into the core financial and business processes, not separate. Modular design lets you pay for and implement only the features you need. ScaleMind AI delivers actionable workforce insights that standard tools lack.	May feature more advanced tools than simple micro-businesses require.

ScaleOcean Atlas Pricing: ScaleOcean uses customized, quote-based pricing based on the selected modules and operational scope. Contact the team for a personalized quotation and product demonstration.

ScaleOcean Capterra Rating: 5.0/5.

2. Sprout Payroll by Sprout Solutions

Sprout Payroll is one of Sprout Solutions’ HR and payroll solutions designed for Philippine enterprises. It also seamlessly integrates employee records, attendance, leave management, compensation, and payroll administration into a single, unified system.

Furthermore, it can also assist HR teams with the effective management of workforce data and eliminate repetitive tasks. It also has a wider range of HR features that you can consider for businesses that have to process payroll:

• Automated Payroll Processing: Simplify payroll routine and repetitive salary calculations.
• Timekeeping & Leave Management: Integrate attendance and approved leave with HR processes.
• Philippine Payroll Compliance: Assist with payroll procedures in line with local regulations.
• Integrated HR Management: Integrate employee information and manage HR-related tasks in a single platform.

Pros	Cons
Specially crafted for the HR and payroll needs in the Philippines. Relates payroll to other HRM activities. Provides businesses with managed services.	The advanced capabilities might need extra modules or services.

Sprout Payroll Pricing: Pricing is per feature, and businesses need to contact the team for a quotation based on the modules they need.

Sprout Payroll Capterra Rating: 4.7/5.

3. Payroll.PH (JeonSoft)

Payroll.PH is a cloud-based payroll platform from JeonSoft that combines payroll processing, HR management, and timekeeping. It supports Philippine payroll workflows, including salary calculations, tax computations, and payroll reporting.

Businesses can also explore integrations with attendance devices and employee self-service tools to reduce manual encoding and keep workforce records organized. Here are some of the features to optimize payroll process:

• Payroll & Tax Calculations: Process salaries, deductions, and applicable tax computations.
• Government Reporting: Generate relevant payroll and statutory reports.
• Timekeeping Integration: Connect attendance records with payroll workflows.
• Employee Self-Service: Support employee access to relevant payroll and HR information.

Pros	Cons
Built around Philippine payroll requirements. Combines payroll, HR, and timekeeping functions.	Advanced configurations may require provider assistance.

Payroll.PH Pricing: Contact JeonSoft for current subscription rates and package details.

Payroll.PH Capterra Rating: No rating on Capterra.

4. GreatDay HR

GreatDay HR is an HRIS and payroll solution built on cloud technologies, and ideal for small and medium enterprises (SMEs) in the Philippines. It combines payroll processing with attendance tracking, leave administration, employee records, and reporting,

Furthermore, GreatDay is beneficial for businesses that wish to use a single platform to handle everyday HR functions. It’s mobile-friendly, which also enables employee and manager interactions outside the office. These are features:

• Automated Payroll: Compute payroll and applicable deductions for employees.
• Attendance & Leave Tracking: Link attendance and leave data with payroll.
• Tax & Payroll Reporting: Create relevant tax reports and BIR Form 2316.
• Employee Self-Service: Make payslips available to employees and provide employee information.

Pros	Cons
Tailored to fit the Philippine HR and Payroll needs. In one system, it manages attendance, leave and payroll.	Companies with specialized workflows should verify available configuration options.

GreatDay HR Pricing: Basic plan from ₱69,75 per employee per month. Other plans are custom-quoted.

GreatDay GR Capterra Rating: NA.

5. AanyaHR

AanyaHR integrates payroll, attendance, leave, and employee management into one platform that is accessible from the cloud. It offers features such as salary calculations, overtime pay, holiday pay, 13th-month pay and digital pay slip.

It could be a good choice for companies looking to minimize the time they spend on manual payroll tasks and keep better employee and payroll information. Below here are the key features of AanyaHR:

• Automated Payroll Calculations: Compute salaries, deductions, overtime, special pay.
• Statutory Contributions & Tax: Calculate applicable SSS, PhilHealth, Pag-IBIG, and withholding tax.
• Attendance Integration: Connect working hours and leave records with payroll.
• Payroll Reports & Payslips: Create payroll reports and electronic payslips.

Pros	Cons
Specifically addresses Philippine payroll requirements. Connects timekeeping and leave management with payroll.	Prices and services are to be confirmed with the service provider.

AanyaHR Pricing: Contact AanyaHR for a quotation based on your workforce and service requirements.

AanyaHR Capterra Rating: No review on Capterra.

6. PayrollHero

PayrollHero is specifically geared towards payroll processing for businesses in the Philippines, providing tools for gross-to-net calculations, tax computations, government forms, and payroll reporting. It can be applicable to companies that have multiple shifts or schedules.

If a business is looking into PayrollHero, they should check the features it offers and ensure that the one they have access to is suitable for their payroll and reporting needs. PayrollHero’s features below optimize HR process:

• Gross-to-Net Calculations: Determine employee pay and deductible amounts.
• Tax & Government Forms: Assist with the preparation of payroll tax forms and with tax calculations.
• Allowances & Benefits: Organize employee compensation components.
• Payroll Reports: Create reports and export relevant information.

Pros	Cons
Focuses on Philippine payroll requirements. Offers payroll reporting and compensation management features.	Companies should verify current integrations, support arrangements, and suitability for their specific payroll workflows.

PayrollHero Pricing: Approximately starts at ₱255,77 per user per month, you can contact the team for more pricing details.

PayrollHero Capterra Rating: No review on Capterra.

7. QuickBooks Payroll

QuickBooks basically provides Accounting Software with some integration with HReasily for Payroll and Leave Management. This way a business can sync payroll data to their books and avoid having to maintain two separate records.

However, it is important to note that Just QuickBooks accounting cannot be considered to be a complete solution for the Philippine statutory payroll calculations. The following are features:

• Accounting Integration: Synced supported payroll data with financial records.
• Payroll via HReasily: Access payroll and leave management through the linked service.
• Financial Reporting: Track expenses and review business performance in QuickBooks.
• Cloud Access: Online accounting information handling.

Pros	Cons
Useful for businesses already using QuickBooks for accounting. Can reduce manual transfers between compatible payroll and accounting systems.	Requires an additional payroll service and associated fees.

QuickBooks Pricing: QuickBooks starting price of ₱223,76 per month on a flat-rate model, with a free trial available. Costs rise as employee count and add-ons grow.

QuickBooks Capterra Rating: 4.3/5.

8. Xero PH

Xero is an online accounting software that connects with payroll apps to help you track payroll costs in your business reports. Instead of calculating paychecks on its own, Xero works together with specialized HR and payroll apps.

This combination is great for small businesses because it keeps your financial records up to date automatically while letting a dedicated app handle the complex payroll math and local rules. Here are the key functions:

• Accounting & Financial Reports: Track payroll-related expenses alongside other business transactions.
• Third-Party Payroll Integration: Connect compatible applications for payroll processing.
• Cloud Collaboration: Give authorized teams and accountants access to financial records.
• Centralized Financial Data: Review payroll expenses as part of the company’s overall financial position.

Pros	Cons
Suitable for businesses already using Xero accounting. Offers flexibility to choose a compatible payroll application.	Additional integration or subscription fees may apply.

Xero Pricing: Xero subscription fees are separate into some subscriptions: Lite at ₱406, Starter at ₱1,682, Standard at ₱2,900 and Premium at ₱4,350.

Xero Capterra Rating: 4.4/5.

Core Features of Payroll Software You Need to Consider

The first thing to keep in mind is that a payroll platform should be able to fit your payroll process, rather than just present an impressive list of functions. Focus on functionality that minimizes error, helps achieve compliance and aids in managing monthly payroll:

• Automated salary calculations: Calculates regular pay, overtime, allowances, bonuses, and deductions using configured payroll rules. This minimizes repetitive calculations and aids to make payroll more consistent.
• Philippine statutory calculations: Supports relevant SSS, PhilHealth, Pag-IBIG and withholding tax rules. Check how quickly the provider updates its system when government requirements change.
• Attendance and leave integration: Relates working hours, approved overtime, absences and leave to payroll. It’s especially helpful for shift teams, and for companies that have multiple locations.
• Generate Pay Slip: Generates clear pay slips that display earnings, deductions, contribution and net pay, ensuring that employees are aware of the way their salaries are calculated.
• Government reports and payroll records: Organizes payroll summaries and supporting records needed for internal reviews and applicable statutory reporting. Confirm the exact reports available for Philippine requirements.
• Employee self-service: Provides employees with access to their pay slip and other personal data that has to be repeatedly provided by HR. Confidential payroll information should be protected by permissions.
• Accounting and HR integration: Integrates payroll with employee records, accounting, attendance, and other relevant systems to prevent duplicate data entry and enhance reporting.

In Conclusion

Choosing the right payroll software in the Philippines comes down to balancing your current operational needs with your long-term growth. Small teams may only need simple paycheck calculations, but scaling businesses require automated tracking.

Most importantly, the local level compliance is the key. Do a trial run on potential software to test the software against real life situations; and make sure your software provider keeps the platform updated whenever new regulations are issued by the BIR, SSS, Pag-IBIG and PhilHealth.

The ScaleOcean Atlas HRIS & Payroll Module is a fully-integrated solution for businesses looking for a connected ecosystem. Leveraging ScaleMind AI, it seamlessly integrates with core operations, transforming payroll into a clear business insight.

To see how an integrated platform can streamline your local compliance and save valuable HR hours, visit ScaleOcean Philippines or schedule a consultation with our team today.